Links

 

Links here list lots of useful websites of MicroRNA research and bioinformatics.


Micro-RNA and nocoding RNA relatied websites:

 

microrna.org

http://www.microrna.org/microrna/home.do

 

micrornadatabase

http://www.micrornadatabase.com/

 

miRBase: the microRNA database

http://www.mirbase.org/

 

RNAdb: a comprehensive mammalian noncoding RNA database

http://research.imb.uq.edu.au/rnadb/

 

PMRD: plant microRNA database

http://bioinformatics.cau.edu.cn/PMRD/

 

miRecords: the resource for animal miRNA-target interactions

http://mirecords.biolead.org/

 

CoGeMiR: Comparative Genomics MicroRNA database

http://cogemir.tigem.it/

 

miRWalk: The Database on Predicted and Published MicroRNAs

http://www.umm.uni-heidelberg.de/apps/zmf/mirwalk/

 

TarBase: The Database of experimentally supported targets

http://diana.cslab.ece.ntua.gr/tarbase/

 

TargetScan: Search for predicted microRNA targets in mammals

http://www.targetscan.org/

 

miRNAMap: Database on genomic maps of microRNAs in metazoan genomes

http://mirnamap.mbc.nctu.edu.tw/

 

miRex: Infobase of microRNA Gene Expression

http://miracle.igib.res.in/mirex/

 

SBI: microrna-research. Study microRNA regulatory networks

http://www.systembio.com/microrna-research

 

deepBase: A database for deeply annotating and mining the deep sequencing data

http://deepbase.sysu.edu.cn/

 

NcRNA.org: a portal site for functional RNAs and non-coding RNAs

http://www.ncrna.org/

 

The RNase P Database

http://jwbrown.mbio.ncsu.edu/RNaseP/home.html target

 

SRPDB (Signal Recognition Particle Database)

http://rth.dk/resources/rnp/SRPDB/SRPDB.html

 

Noncoding RNAs Database

http://biobases.ibch.poznan.pl/ncRNA/

 

Rfam: RNA families database of alignments and CMs

http://www.sanger.ac.uk/resources/databases/rfam.html


Analysis Tools websites:

 

NCBI: National Center for Biotechnology Information

http://www.ncbi.nlm.nih.gov/

 

EMBL Nucleotide Sequence Database

http://www.ebi.ac.uk/embl/

 

Ensembl Genome Browser

http://www.ensembl.org/

 

Vienna RNA Package

http://www.tbi.univie.ac.at/~ivo/RNA/

 

Michael Zuker's mfold

http://www.bioinfo.rpi.edu/zukerm/

 

Bioperl

lhttp://bioperl.org/

 

The R Project for Statistical Computing

http://www.r-project.org/

 

The European Molecular Biology Open Software Suite

http://emboss.sourceforge.net/download/


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