piRNA



Detailed information of piRNA piR-hsa-28374
Go to: General Datasets Location Target Cancer Reference
General Information
Name:piR-hsa-28374
Organism:Human
Sequence:GGGGATGTAGCTCAGTGGTAGAGCGCATGCT
Length:31
Accession: DQ598159
Aliases:piR-36225 PIR59270
Number of Papers:1
Number of Methods:1
Datasets
DatasetAccessionReadsPubMedMethodTissue
1N/AN/A16751776small RNAtestis
Location in hg38
10 best hit(s) with 0 mismatch(es) in hg38. RefSeq Gene RepeatMasker
Location 1chr12:124921795-124921826:-tRNA tRNA tRNA-Ala-GCG;
Location 2chr12:124939965-124939996:+tRNA tRNA tRNA-Ala-GCG;
Location 3chr5:181206867-181206898:+tRNA tRNA tRNA-Ala-GCG;
Location 4chr6:26553502-26553533:+tRNA tRNA tRNA-Ala-GCG;
Location 5chr6:28643444-28643475:+tRNA tRNA tRNA-Ala-GCG;
Location 6chr6:28658277-28658308:-tRNA tRNA tRNA-Ala-GCY_;
Location 7chr6:28673876-28673907:-tRNA tRNA tRNA-Ala-GCG;
Location 8chr6_GL000251v2_alt:133281-133312:+tRNA tRNA tRNA-Ala-GCG;
Location 9chr6_GL000251v2_alt:148118-148149:-tRNA tRNA tRNA-Ala-GCY_;
Location 10chr6_GL000251v2_alt:163712-163743:-tRNA tRNA tRNA-Ala-GCG;
To search for more loci, you can Run Bowtie here or Blat in UCSC.
Target mRNA
No record.
Target lncRNA
No record.
Cancer
ID in articleCancerSubtypeExpressionFunctionPubMed
piR-20485breast cancerup-regulated FC 5.1223229900
Reference
PubMed: 16751776
Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
A germline-specific class of small RNAs binds mammalian Piwi proteins
Nature. 2006 Jul 13;442(7099):199-202.
PubMed: 23229900
Huang G, Hu H, Xue X, Shen S, Gao E, Guo G, Shen X, Zhang X.
Altered expression of piRNAs and their relation with clinicopathologic features of breast cancer.
Clin Transl Oncol. 2013 Jul;15(7):563-8. doi: 10.1007/s12094-012-0966-0. Epub 2012 Nov 15.