piRNA



Detailed information of piRNA piR-hsa-27493
Go to: General Datasets Location Target Cancer Reference
General Information
Name:piR-hsa-27493
Organism:Human
Sequence:GCATTGGTGGTTCAGTGGTAGAATTCTCAC
Length:30
Accession: DQ597218
Aliases:piR-35284 PIR58329
Number of Papers:2
Number of Methods:2
Datasets
DatasetAccessionReadsPubMedMethodTissue
1N/AN/A16751776small RNAtestis
167GSM15845212125818294small RNAadult ovary
168GSM158452213925818294small RNAadult ovary
169GSM15845235725818294oxidized small RNAadult ovary
170GSM15845244925818294oxidized small RNAadult ovary
171GSM15845251725818294small RNAovary from 1st trimester embryos
172GSM1584526725818294small RNAovary from 1st trimester embryos
173GSM1584527625818294oxidized small RNAovary from 1st trimester embryos
175GSM15845299325818294small RNAovary from 2nd trimester embryos
176GSM158453057725818294small RNAovary from 2nd trimester embryos
177GSM15845312825818294oxidized small RNAovary from 2nd trimester embryos
178GSM1584532125818294oxidized small RNAovary from 2nd trimester embryos
Location in hg38
1 best hit(s) with 0 mismatch(es) in hg38. RefSeq Gene RepeatMasker
Location 1chr1:229537856-229537886:+ABCB10 NM_012089; tRNA tRNA tRNA-Gly-GGY;
To search for more loci, you can Run Bowtie here or Blat in UCSC.
Target mRNA
No record.
Target lncRNA
No record.
Cancer
ID in articleCancerSubtypeExpressionFunctionPubMed
piR-19825breast cancerup-regulated FC 6.5223229900
Reference
PubMed: 16751776
Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
A germline-specific class of small RNAs binds mammalian Piwi proteins
Nature. 2006 Jul 13;442(7099):199-202.
PubMed: 25818294
Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LA, Zischler H, Butter F, Roelen BA, Ketting RF.
Piwi proteins and piRNAs in mammalian oocytes and early embryos.
Cell Rep. 2015 Mar 31;10(12):2069-82.
PubMed: 23229900
Huang G, Hu H, Xue X, Shen S, Gao E, Guo G, Shen X, Zhang X.
Altered expression of piRNAs and their relation with clinicopathologic features of breast cancer.
Clin Transl Oncol. 2013 Jul;15(7):563-8. doi: 10.1007/s12094-012-0966-0. Epub 2012 Nov 15.