piRNA



Detailed information of piRNA piR-hsa-24360
Go to: General Datasets Location Target Cancer Reference
General Information
Name:piR-hsa-24360
Organism:Human
Sequence:TTCACTGATGAGAGCATTGTTCTGAGC
Length:27
Accession: DQ594126
Aliases:piR-60238 PIR55237
Number of Papers:2
Number of Methods:2
Datasets
DatasetAccessionReadsPubMedMethodTissue
1N/AN/A16751776small RNAtestis
167GSM1584521245425818294small RNAadult ovary
168GSM1584522304825818294small RNAadult ovary
169GSM15845238725818294oxidized small RNAadult ovary
170GSM15845245525818294oxidized small RNAadult ovary
171GSM158452512825818294small RNAovary from 1st trimester embryos
172GSM158452630125818294small RNAovary from 1st trimester embryos
173GSM15845271225818294oxidized small RNAovary from 1st trimester embryos
174GSM1584528125818294oxidized small RNAovary from 1st trimester embryos
175GSM158452939825818294small RNAovary from 2nd trimester embryos
176GSM158453030525818294small RNAovary from 2nd trimester embryos
177GSM1584531525818294oxidized small RNAovary from 2nd trimester embryos
178GSM1584532325818294oxidized small RNAovary from 2nd trimester embryos
Location in hg38
1 best hit(s) with 0 mismatch(es) in hg38. RefSeq Gene RepeatMasker
Location 1chr1:30968167-30968194:-PUM1 NM_014676; PUM1 NM_001020658; SNORD103C NR_003066;
To search for more loci, you can Run Bowtie here or Blat in UCSC.
Target mRNA
No record.
Target lncRNA
No record.
Cancer
ID in articleCancerSubtypeExpressionFunctionPubMed
piR-17458Breast cancerdown-regulated FC 2.0423229900
Reference
PubMed: 16751776
Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
A germline-specific class of small RNAs binds mammalian Piwi proteins
Nature. 2006 Jul 13;442(7099):199-202.
PubMed: 25818294
Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LA, Zischler H, Butter F, Roelen BA, Ketting RF.
Piwi proteins and piRNAs in mammalian oocytes and early embryos.
Cell Rep. 2015 Mar 31;10(12):2069-82.
PubMed: 23229900
Huang G, Hu H, Xue X, Shen S, Gao E, Guo G, Shen X, Zhang X.
Altered expression of piRNAs and their relation with clinicopathologic features of breast cancer.
Clin Transl Oncol. 2013 Jul;15(7):563-8. doi: 10.1007/s12094-012-0966-0. Epub 2012 Nov 15.