piRNA



Detailed information of piRNA piR-hsa-15
Go to: General Datasets Location Reference
General Information
Name:piR-hsa-15
Organism:Human
Sequence:TCTTCTCGGAGCTGCTGTCCAACCTGTAC
Length:29
Accession: DQ578298
Aliases:piR-46410 PIR192565 PIR192363 PIR192391 PIR192437 PIR192467 PIR192504 PIR192541 PIR192607 PIR192638 PIR192707 PIR192731 PIR192768 PIR192801 PIR192824 PIR192856 PIR192898 PIR192922 PIR192957 PIR193012 PIR193066 PIR193100 PIR193150 PIR193160 PIR39409
Number of Papers:3
Datasets
DatasetAccessionReadsPubMedMethodTissue
1N/AN/A16751776small RNAtestis
2N/AN/A16751777small RNAtestis
3N/A622313525small RNAepididymis
Location in hg19
27 best hit(s) with 0 mismatch(es) in hg19. RefSeq Gene RepeatMasker
Location 1chr15:30393336-30393365:-
Location 2chr15:30688286-30688315:+
Location 3chr15:30862333-30862362:-
Location 4chr15:32729635-32729664:+
Location 5chr15:102293668-102293697:+
Location 6chr15:102294012-102294041:+
Location 7chr15:102294538-102294567:+
Location 8chr15:102294973-102295002:+
Location 9chr15:102295499-102295528:+
Location 10chr15:102296025-102296054:+
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC.
Reference
PubMed: 16751776
Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
A germline-specific class of small RNAs binds mammalian Piwi proteins
Nature. 2006 Jul 13;442(7099):199-202.
PubMed: 16751777
Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, Chien M, Russo JJ, Ju J, Sheridan R, Sander C, Zavolan M, Tuschl T.
A novel class of small RNAs bind to MILI protein in mouse testes
Nature. 2006 Jul 13;442(7099):203-7.
PubMed: 22313525
Li Y, Wang HY, Wan FC, Liu FJ, Liu J, Zhang N, Jin SH, Li JY.
Deep sequencing analysis of small non-coding RNAs reveals the diversity of microRNAs and piRNAs in the human epididymis.
Gene. 2012 Apr 15;497(2):330-5.