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RefSeq Gene
 

RefSeq Gene DUX4L5

RefSeq: NM_001127389   Status: Validated
CDS: 5' complete
Entrez Gene: 653545
PubMed on Gene: DUX4L5
PubMed on Product: double homeobox protein 4-like protein 5
GeneCards: DUX4L5
AceView: DUX4L5
Stanford SOURCE: NM_001127389

Summary of DUX4L5


mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |  1380  100.0%  Un_gl000228     +     76142     77521          NM_001127389     1  1380  1380
browser |  1380  100.0%  Un_gl000228     +     72836     74215          NM_001127389     1  1380  1380
browser |  1380   99.8%         10     + 135480558 135485241          NM_001127389     1  1380  1380
browser |  1380   99.8%         10     + 135487177 135491849          NM_001127389     1  1380  1380
browser |  1380  100.0%  Un_gl000228     +    102590    103969          NM_001127389     1  1380  1380
browser |  1380  100.0%  Un_gl000228     +     79448     80827          NM_001127389     1  1380  1380
browser |  1380  100.0%  Un_gl000228     +     86060     87439          NM_001127389     1  1380  1380
browser |  1380  100.0%  Un_gl000228     +     82754     84133          NM_001127389     1  1380  1380
browser |  1380  100.0%          4     + 191012063 191013442          NM_001127389     1  1380  1380
browser |  1380  100.0%          4     + 191008763 191010142          NM_001127389     1  1380  1380
browser |  1380  100.0%          4     + 191005470 191006849          NM_001127389     1  1380  1380
browser |  1380  100.0%          4     + 190998876 191000255          NM_001127389     1  1380  1380
browser |  1380  100.0%          4     + 190995583 190996962          NM_001127389     1  1380  1380
browser |  1380  100.0%          4     + 190992290 190993669          NM_001127389     1  1380  1380
browser |  1380  100.0%  Un_gl000228     +     99284    100663          NM_001127389     1  1380  1380
browser |  1380   99.8%         10     + 135493786 135498458          NM_001127389     1  1380  1380
browser |  1380  100.0%  Un_gl000228     +    105896    107275          NM_001127389     1  1380  1380
browser |  1380  100.0%  Un_gl000228     +    109202    110581          NM_001127389     1  1380  1380
browser |  1380  100.0%  Un_gl000228     +    112508    113887          NM_001127389     1  1380  1380

Position: chrUn_gl000228:72836-74215
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chrUn_gl000228:76142-77521
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chrUn_gl000228:112508-113887
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chrUn_gl000228:109202-110581
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chrUn_gl000228:105896-107275
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chr4:191012063-191013442
Band: 4q35.2
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chrUn_gl000228:86060-87439
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chrUn_gl000228:82754-84133
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chrUn_gl000228:102590-103969
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chrUn_gl000228:99284-100663
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chrUn_gl000228:79448-80827
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chr4:191008763-191010142
Band: 4q35.2
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chr4:191005470-191006849
Band: 4q35.2
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chr10:135480558-135485241
Band: 10q26.3
Genomic Size: 4684
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chr10:135487177-135491849
Band: 10q26.3
Genomic Size: 4673
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chr10:135493786-135498458
Band: 10q26.3
Genomic Size: 4673
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chr4:190992290-190993669
Band: 4q35.2
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chr4:190995583-190996962
Band: 4q35.2
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Position: chr4:190998876-191000255
Band: 4q35.2
Genomic Size: 1380
Strand: +
Gene Symbol: DUX4L5
CDS Start: complete
CDS End: complete

Links to sequence:

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Data last updated: 2013-05-15

Description

The RefSeq Genes track shows known human protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The data underlying this track are updated daily.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), reviewed (dark).

The item labels and display colors of features within this track can be configured through the controls at the top of the track description page. This page is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu.

  • Label: By default, items are labeled by gene name. Click the appropriate Label option to display the accession name instead of the gene name, show both the gene and accession names, or turn off the label completely.
  • Codon coloring: This track contains an optional codon coloring feature that allows users to quickly validate and compare gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. For more information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
  • Hide non-coding genes: By default, both the protein-coding and non-protein-coding genes are displayed. If you wish to see only the coding genes, click this box.

Methods

RefSeq RNAs were aligned against the human genome using blat; those with an alignment of less than 15% were discarded. When a single RNA aligned in multiple places, the alignment having the highest base identity was identified. Only alignments having a base identity level within 0.1% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

This track was produced at UCSC from RNA sequence data generated by scientists worldwide and curated by the NCBI RefSeq project.

References

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.

Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.