Genomes Genome Browser Tables Help  
RefSeq Gene
 

RefSeq Gene MAS1L

RefSeq: NM_052967.2   Status: Provisional
OMIM: 607235
Entrez Gene: 116511
PubMed on Gene: MAS1L
PubMed on Product: mas-related G-protein coupled receptor MRG
GeneCards: MAS1L
AceView: MAS1L
Stanford SOURCE: NM_052967

mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |  1137  100.0%  6_ssto_hap7     -    795075    796211             NM_052967     1  1137  1137
browser |  1137  100.0%          6     -  29454543  29455679             NM_052967     1  1137  1137
browser |  1137  100.0%  6_apd_hap1     -    758021    759157             NM_052967     1  1137  1137
browser |  1137  100.0%  6_cox_hap2     -    973324    974460             NM_052967     1  1137  1137
browser |  1137  100.0%  6_dbb_hap3     -    757874    759010             NM_052967     1  1137  1137
browser |  1137  100.0%  6_mann_hap4     -    757511    758647             NM_052967     1  1137  1137
browser |  1137  100.0%  6_mcf_hap5     -    757725    758861             NM_052967     1  1137  1137
browser |  1137  100.0%  6_qbl_hap6     -    757828    758964             NM_052967     1  1137  1137

Position: chr6_qbl_hap6:757828-758964
Genomic Size: 1137
Strand: -
Gene Symbol: MAS1L
CDS Start: complete
CDS End: complete

Position: chr6_ssto_hap7:795075-796211
Genomic Size: 1137
Strand: -
Gene Symbol: MAS1L
CDS Start: complete
CDS End: complete

Position: chr6:29454543-29455679
Band: 6p22.1
Genomic Size: 1137
Strand: -
Gene Symbol: MAS1L
CDS Start: complete
CDS End: complete

Position: chr6_apd_hap1:758021-759157
Genomic Size: 1137
Strand: -
Gene Symbol: MAS1L
CDS Start: complete
CDS End: complete

Position: chr6_cox_hap2:973324-974460
Genomic Size: 1137
Strand: -
Gene Symbol: MAS1L
CDS Start: complete
CDS End: complete

Position: chr6_dbb_hap3:757874-759010
Genomic Size: 1137
Strand: -
Gene Symbol: MAS1L
CDS Start: complete
CDS End: complete

Position: chr6_mann_hap4:757511-758647
Genomic Size: 1137
Strand: -
Gene Symbol: MAS1L
CDS Start: complete
CDS End: complete

Position: chr6_mcf_hap5:757725-758861
Genomic Size: 1137
Strand: -
Gene Symbol: MAS1L
CDS Start: complete
CDS End: complete

Links to sequence:

View table schema

Go to RefSeq Genes track controls

Data last updated: 2013-05-15

Description

The RefSeq Genes track shows known human protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The data underlying this track are updated daily.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), reviewed (dark).

The item labels and display colors of features within this track can be configured through the controls at the top of the track description page. This page is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu.

  • Label: By default, items are labeled by gene name. Click the appropriate Label option to display the accession name instead of the gene name, show both the gene and accession names, or turn off the label completely.
  • Codon coloring: This track contains an optional codon coloring feature that allows users to quickly validate and compare gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. For more information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
  • Hide non-coding genes: By default, both the protein-coding and non-protein-coding genes are displayed. If you wish to see only the coding genes, click this box.

Methods

RefSeq RNAs were aligned against the human genome using blat; those with an alignment of less than 15% were discarded. When a single RNA aligned in multiple places, the alignment having the highest base identity was identified. Only alignments having a base identity level within 0.1% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

This track was produced at UCSC from RNA sequence data generated by scientists worldwide and curated by the NCBI RefSeq project.

References

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.

Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.