Genomes Genome Browser Tables Help  
RefSeq Gene
 

RefSeq Gene OR14J1

RefSeq: NM_030946.1   Status: Provisional
CDS: completeness unknown
Entrez Gene: 442191
PubMed on Gene: OR14J1
PubMed on Product: olfactory receptor 14J1
GeneCards: OR14J1
AceView: OR14J1
Stanford SOURCE: NM_030946

Summary of OR14J1

Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008].


mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |   966  100.0%          6     +  29274467  29275432             NM_030946     1   966   966
browser |   966   99.9%  6_apd_hap1     +    577950    578915             NM_030946     1   966   966
browser |   966  100.0%  6_cox_hap2     +    793386    794351             NM_030946     1   966   966
browser |   966   99.9%  6_dbb_hap3     +    577918    578883             NM_030946     1   966   966
browser |   966   99.9%  6_mann_hap4     +    577912    578877             NM_030946     1   966   966
browser |   966  100.0%  6_mcf_hap5     +    578098    579063             NM_030946     1   966   966
browser |   966   99.9%  6_ssto_hap7     +    615421    616386             NM_030946     1   966   966

Position: chr6:29274467-29275432
Band: 6p22.1
Genomic Size: 966
Strand: +
Gene Symbol: OR14J1
CDS Start: complete
CDS End: complete

Position: chr6_apd_hap1:577950-578915
Genomic Size: 966
Strand: +
Gene Symbol: OR14J1
CDS Start: complete
CDS End: complete

Position: chr6_ssto_hap7:615421-616386
Genomic Size: 966
Strand: +
Gene Symbol: OR14J1
CDS Start: complete
CDS End: complete

Position: chr6_cox_hap2:793386-794351
Genomic Size: 966
Strand: +
Gene Symbol: OR14J1
CDS Start: complete
CDS End: complete

Position: chr6_dbb_hap3:577918-578883
Genomic Size: 966
Strand: +
Gene Symbol: OR14J1
CDS Start: complete
CDS End: complete

Position: chr6_mann_hap4:577912-578877
Genomic Size: 966
Strand: +
Gene Symbol: OR14J1
CDS Start: complete
CDS End: complete

Position: chr6_mcf_hap5:578098-579063
Genomic Size: 966
Strand: +
Gene Symbol: OR14J1
CDS Start: complete
CDS End: complete

Links to sequence:

View table schema

Go to RefSeq Genes track controls

Data last updated: 2013-05-15

Description

The RefSeq Genes track shows known human protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The data underlying this track are updated daily.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), reviewed (dark).

The item labels and display colors of features within this track can be configured through the controls at the top of the track description page. This page is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu.

  • Label: By default, items are labeled by gene name. Click the appropriate Label option to display the accession name instead of the gene name, show both the gene and accession names, or turn off the label completely.
  • Codon coloring: This track contains an optional codon coloring feature that allows users to quickly validate and compare gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. For more information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
  • Hide non-coding genes: By default, both the protein-coding and non-protein-coding genes are displayed. If you wish to see only the coding genes, click this box.

Methods

RefSeq RNAs were aligned against the human genome using blat; those with an alignment of less than 15% were discarded. When a single RNA aligned in multiple places, the alignment having the highest base identity was identified. Only alignments having a base identity level within 0.1% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

This track was produced at UCSC from RNA sequence data generated by scientists worldwide and curated by the NCBI RefSeq project.

References

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.

Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.