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RefSeq Gene
 

RefSeq Gene OR2W1

RefSeq: NM_030903.3   Status: Validated
CDS: completeness unknown
Entrez Gene: 26692
PubMed on Gene: OR2W1
PubMed on Product: olfactory receptor 2W1
GeneCards: OR2W1
AceView: OR2W1
Stanford SOURCE: NM_030903

Summary of OR2W1

Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. ##Evidence-Data-START## Transcript is intronless :: BC103870.1 [ECO:0000345] ##Evidence-Data-END##


mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |   963  100.0%          6     -  29011990  29012952             NM_030903     1   963   963
browser |   963  100.0%  6_apd_hap1     -    315432    316394             NM_030903     1   963   963
browser |   963  100.0%  6_cox_hap2     -    530807    531769             NM_030903     1   963   963
browser |   963  100.0%  6_dbb_hap3     -    315401    316363             NM_030903     1   963   963
browser |   963  100.0%  6_mann_hap4     -    315391    316353             NM_030903     1   963   963
browser |   963  100.0%  6_mcf_hap5     -    315540    316502             NM_030903     1   963   963
browser |   963  100.0%  6_qbl_hap6     -    315387    316349             NM_030903     1   963   963
browser |   963  100.0%  6_ssto_hap7     -    352868    353830             NM_030903     1   963   963

Position: chr6:29011990-29012952
Band: 6p22.1
Genomic Size: 963
Strand: -
Gene Symbol: OR2W1
CDS Start: complete
CDS End: complete

Position: chr6_apd_hap1:315432-316394
Genomic Size: 963
Strand: -
Gene Symbol: OR2W1
CDS Start: complete
CDS End: complete

Position: chr6_cox_hap2:530807-531769
Genomic Size: 963
Strand: -
Gene Symbol: OR2W1
CDS Start: complete
CDS End: complete

Position: chr6_dbb_hap3:315401-316363
Genomic Size: 963
Strand: -
Gene Symbol: OR2W1
CDS Start: complete
CDS End: complete

Position: chr6_mann_hap4:315391-316353
Genomic Size: 963
Strand: -
Gene Symbol: OR2W1
CDS Start: complete
CDS End: complete

Position: chr6_mcf_hap5:315540-316502
Genomic Size: 963
Strand: -
Gene Symbol: OR2W1
CDS Start: complete
CDS End: complete

Position: chr6_qbl_hap6:315387-316349
Genomic Size: 963
Strand: -
Gene Symbol: OR2W1
CDS Start: complete
CDS End: complete

Position: chr6_ssto_hap7:352868-353830
Genomic Size: 963
Strand: -
Gene Symbol: OR2W1
CDS Start: complete
CDS End: complete

Links to sequence:

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Data last updated: 2013-05-15

Description

The RefSeq Genes track shows known human protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The data underlying this track are updated daily.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), reviewed (dark).

The item labels and display colors of features within this track can be configured through the controls at the top of the track description page. This page is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu.

  • Label: By default, items are labeled by gene name. Click the appropriate Label option to display the accession name instead of the gene name, show both the gene and accession names, or turn off the label completely.
  • Codon coloring: This track contains an optional codon coloring feature that allows users to quickly validate and compare gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. For more information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
  • Hide non-coding genes: By default, both the protein-coding and non-protein-coding genes are displayed. If you wish to see only the coding genes, click this box.

Methods

RefSeq RNAs were aligned against the human genome using blat; those with an alignment of less than 15% were discarded. When a single RNA aligned in multiple places, the alignment having the highest base identity was identified. Only alignments having a base identity level within 0.1% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

This track was produced at UCSC from RNA sequence data generated by scientists worldwide and curated by the NCBI RefSeq project.

References

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.

Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.