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RefSeq Gene
 

RefSeq Gene EGFL8

RefSeq: NR_037860.1   Status: Validated
CDS: 3' complete
OMIM: 609897
Entrez Gene: 80864
PubMed on Gene: EGFL8
GeneCards: EGFL8
AceView: EGFL8
Stanford SOURCE: NR_037860

Summary of EGFL8


mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |  1316  100.0%  6_ssto_hap7     +   3480109   3483790             NR_037860     1  1316  1335
browser |  1316  100.0%          6     +  32132382  32136062             NR_037860     1  1316  1335
browser |  1316  100.0%  6_apd_hap1     +   3447122   3450803             NR_037860     1  1316  1335
browser |  1316  100.0%  6_cox_hap2     +   3603063   3606743             NR_037860     1  1316  1335
browser |  1313  100.0%  6_mann_hap4     +   3475209   3478886             NR_037860     1  1316  1335
browser |  1316  100.0%  6_mcf_hap5     +   3512211   3515891             NR_037860     1  1316  1335
browser |  1316  100.0%  6_qbl_hap6     +   3393402   3397082             NR_037860     1  1316  1335

Position: chr6_cox_hap2:3603063-3606743
Genomic Size: 3681
Strand: +
Gene Symbol: EGFL8

Position: chr6:32132382-32136062
Band: 6p21.32
Genomic Size: 3681
Strand: +
Gene Symbol: EGFL8

Position: chr6_apd_hap1:3447122-3450803
Genomic Size: 3682
Strand: +
Gene Symbol: EGFL8

Position: chr6_qbl_hap6:3393402-3397082
Genomic Size: 3681
Strand: +
Gene Symbol: EGFL8

Position: chr6_ssto_hap7:3480109-3483790
Genomic Size: 3682
Strand: +
Gene Symbol: EGFL8

Position: chr6_mann_hap4:3475209-3478886
Genomic Size: 3678
Strand: +
Gene Symbol: EGFL8

Position: chr6_mcf_hap5:3512211-3515891
Genomic Size: 3681
Strand: +
Gene Symbol: EGFL8

Links to sequence:

View table schema

Go to RefSeq Genes track controls

Data last updated: 2013-05-15

Description

The RefSeq Genes track shows known human protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The data underlying this track are updated daily.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), reviewed (dark).

The item labels and display colors of features within this track can be configured through the controls at the top of the track description page. This page is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu.

  • Label: By default, items are labeled by gene name. Click the appropriate Label option to display the accession name instead of the gene name, show both the gene and accession names, or turn off the label completely.
  • Codon coloring: This track contains an optional codon coloring feature that allows users to quickly validate and compare gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. For more information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
  • Hide non-coding genes: By default, both the protein-coding and non-protein-coding genes are displayed. If you wish to see only the coding genes, click this box.

Methods

RefSeq RNAs were aligned against the human genome using blat; those with an alignment of less than 15% were discarded. When a single RNA aligned in multiple places, the alignment having the highest base identity was identified. Only alignments having a base identity level within 0.1% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

This track was produced at UCSC from RNA sequence data generated by scientists worldwide and curated by the NCBI RefSeq project.

References

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.

Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.