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RefSeq Gene
 

RefSeq Gene LOC100507547

RefSeq: NR_037172.1   Status: Validated
CDS: 3' complete
Entrez Gene: 100507547
PubMed on Gene: LOC100507547
GeneCards: LOC100507547
AceView: LOC100507547
Stanford SOURCE: NR_037172

Summary of LOC100507547


mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |   548  100.0%          6     -  32120579  32122142             NR_037172     1   548   565
browser |   548   99.7%  6_apd_hap1     -   3435317   3436880             NR_037172     1   548   565
browser |   548   99.9%  6_cox_hap2     -   3591246   3592810             NR_037172     1   548   565
browser |   548   99.9%  6_dbb_hap3     -   3399752   3401315             NR_037172     1   548   565
browser |   548   99.9%  6_mann_hap4     -   3463423   3464986             NR_037172     1   548   565
browser |   548   99.9%  6_mcf_hap5     -   3500402   3501965             NR_037172     1   548   565
browser |   547   99.7%  6_qbl_hap6     -   3381593   3383155             NR_037172     1   548   565
browser |   548   99.7%  6_ssto_hap7     -   3468304   3469867             NR_037172     1   548   565

Position: chr6:32120579-32122142
Band: 6p21.32
Genomic Size: 1564
Strand: -
Gene Symbol: LOC100507547

Position: chr6_apd_hap1:3435317-3436880
Genomic Size: 1564
Strand: -
Gene Symbol: LOC100507547

Position: chr6_cox_hap2:3591246-3592810
Genomic Size: 1565
Strand: -
Gene Symbol: LOC100507547

Position: chr6_dbb_hap3:3399752-3401315
Genomic Size: 1564
Strand: -
Gene Symbol: LOC100507547

Position: chr6_mann_hap4:3463423-3464986
Genomic Size: 1564
Strand: -
Gene Symbol: LOC100507547

Position: chr6_mcf_hap5:3500402-3501965
Genomic Size: 1564
Strand: -
Gene Symbol: LOC100507547

Position: chr6_qbl_hap6:3381593-3383155
Genomic Size: 1563
Strand: -
Gene Symbol: LOC100507547

Position: chr6_ssto_hap7:3468304-3469867
Genomic Size: 1564
Strand: -
Gene Symbol: LOC100507547

Links to sequence:

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Data last updated: 2013-05-15

Description

The RefSeq Genes track shows known human protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The data underlying this track are updated daily.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), reviewed (dark).

The item labels and display colors of features within this track can be configured through the controls at the top of the track description page. This page is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu.

  • Label: By default, items are labeled by gene name. Click the appropriate Label option to display the accession name instead of the gene name, show both the gene and accession names, or turn off the label completely.
  • Codon coloring: This track contains an optional codon coloring feature that allows users to quickly validate and compare gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. For more information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
  • Hide non-coding genes: By default, both the protein-coding and non-protein-coding genes are displayed. If you wish to see only the coding genes, click this box.

Methods

RefSeq RNAs were aligned against the human genome using blat; those with an alignment of less than 15% were discarded. When a single RNA aligned in multiple places, the alignment having the highest base identity was identified. Only alignments having a base identity level within 0.1% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

This track was produced at UCSC from RNA sequence data generated by scientists worldwide and curated by the NCBI RefSeq project.

References

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.

Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.