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RefSeq Gene
 

RefSeq Gene NFKBIL1

RefSeq: NM_001144963.1   Status: Reviewed
CDS: 3' complete
OMIM: 601022
Entrez Gene: 4795
PubMed on Gene: NFKBIL1
PubMed on Product: NF-kappa-B inhibitor-like protein 1 isoform 4
GeneCards: NFKBIL1
AceView: NFKBIL1
Stanford SOURCE: NM_001144963

Summary of NFKBIL1

This gene encodes a divergent member of the I-kappa-B family of proteins. Its function has not been determined. The gene lies within the major histocompatibility complex (MHC) class I region on chromosome 6. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2009].


mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |  1385  100.0%  6_ssto_hap7     +   2845433   2857408          NM_001144963     1  1385  1412
browser |  1385  100.0%          6     +  31514628  31526606          NM_001144963     1  1385  1412
browser |  1385  100.0%  6_cox_hap2     +   3024283   3036248          NM_001144963     1  1385  1412
browser |  1385  100.0%  6_dbb_hap3     +   2800202   2812171          NM_001144963     1  1385  1412
browser |  1385  100.0%  6_mann_hap4     +   2857520   2869496          NM_001144963     1  1385  1412
browser |  1385   99.9%  6_mcf_hap5     +   2894371   2906339          NM_001144963     1  1385  1412
browser |  1385  100.0%  6_qbl_hap6     +   2808299   2820269          NM_001144963     1  1385  1412

Position: chr6:31514628-31526606
Band: 6p21.33
Genomic Size: 11979
Strand: +
Gene Symbol: NFKBIL1
CDS Start: complete
CDS End: complete

Position: chr6_cox_hap2:3024283-3036248
Genomic Size: 11966
Strand: +
Gene Symbol: NFKBIL1
CDS Start: complete
CDS End: complete

Position: chr6_dbb_hap3:2800202-2812171
Genomic Size: 11970
Strand: +
Gene Symbol: NFKBIL1
CDS Start: complete
CDS End: complete

Position: chr6_mann_hap4:2857520-2869496
Genomic Size: 11977
Strand: +
Gene Symbol: NFKBIL1
CDS Start: complete
CDS End: complete

Position: chr6_mcf_hap5:2894371-2906339
Genomic Size: 11969
Strand: +
Gene Symbol: NFKBIL1
CDS Start: complete
CDS End: complete

Position: chr6_qbl_hap6:2808299-2820269
Genomic Size: 11971
Strand: +
Gene Symbol: NFKBIL1
CDS Start: complete
CDS End: complete

Position: chr6_ssto_hap7:2845433-2857408
Genomic Size: 11976
Strand: +
Gene Symbol: NFKBIL1
CDS Start: complete
CDS End: complete

Links to sequence:

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Data last updated: 2013-05-15

Description

The RefSeq Genes track shows known human protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The data underlying this track are updated daily.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), reviewed (dark).

The item labels and display colors of features within this track can be configured through the controls at the top of the track description page. This page is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu.

  • Label: By default, items are labeled by gene name. Click the appropriate Label option to display the accession name instead of the gene name, show both the gene and accession names, or turn off the label completely.
  • Codon coloring: This track contains an optional codon coloring feature that allows users to quickly validate and compare gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. For more information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
  • Hide non-coding genes: By default, both the protein-coding and non-protein-coding genes are displayed. If you wish to see only the coding genes, click this box.

Methods

RefSeq RNAs were aligned against the human genome using blat; those with an alignment of less than 15% were discarded. When a single RNA aligned in multiple places, the alignment having the highest base identity was identified. Only alignments having a base identity level within 0.1% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

This track was produced at UCSC from RNA sequence data generated by scientists worldwide and curated by the NCBI RefSeq project.

References

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.

Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.