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RefSeq Gene
 

RefSeq Gene TUBB

RefSeq: NM_178014.3   Status: Provisional
OMIM: 191130
Entrez Gene: 203068
PubMed on Gene: TUBB
PubMed on Product: tubulin beta chain
GeneCards: TUBB
AceView: TUBB
Stanford SOURCE: NM_178014

mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |  2483  100.0%  6_ssto_hap7     +   2020464   2025502             NM_178014     1  2483  2510
browser |  2483  100.0%          6     +  30688157  30693195             NM_178014     1  2483  2510
browser |  2483  100.0%  6_apd_hap1     +   1999799   2004837             NM_178014     1  2483  2510
browser |  2483  100.0%  6_cox_hap2     +   2200225   2205263             NM_178014     1  2483  2510
browser |  2483  100.0%  6_dbb_hap3     +   1981815   1986853             NM_178014     1  2483  2510
browser |  2483  100.0%  6_mann_hap4     +   2036251   2041289             NM_178014     1  2483  2510
browser |  2483  100.0%  6_mcf_hap5     +   2070040   2075078             NM_178014     1  2483  2510
browser |  2483  100.0%  6_qbl_hap6     +   1981088   1986127             NM_178014     1  2483  2510

Position: chr6:30688157-30693195
Band: 6p21.33
Genomic Size: 5039
Strand: +
Gene Symbol: TUBB
CDS Start: complete
CDS End: complete

Position: chr6_apd_hap1:1999799-2004837
Genomic Size: 5039
Strand: +
Gene Symbol: TUBB
CDS Start: complete
CDS End: complete

Position: chr6_cox_hap2:2200225-2205263
Genomic Size: 5039
Strand: +
Gene Symbol: TUBB
CDS Start: complete
CDS End: complete

Position: chr6_dbb_hap3:1981815-1986853
Genomic Size: 5039
Strand: +
Gene Symbol: TUBB
CDS Start: complete
CDS End: complete

Position: chr6_mann_hap4:2036251-2041289
Genomic Size: 5039
Strand: +
Gene Symbol: TUBB
CDS Start: complete
CDS End: complete

Position: chr6_mcf_hap5:2070040-2075078
Genomic Size: 5039
Strand: +
Gene Symbol: TUBB
CDS Start: complete
CDS End: complete

Position: chr6_qbl_hap6:1981088-1986127
Genomic Size: 5040
Strand: +
Gene Symbol: TUBB
CDS Start: complete
CDS End: complete

Position: chr6_ssto_hap7:2020464-2025502
Genomic Size: 5039
Strand: +
Gene Symbol: TUBB
CDS Start: complete
CDS End: complete

Links to sequence:

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Data last updated: 2013-05-15

Description

The RefSeq Genes track shows known human protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The data underlying this track are updated daily.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), reviewed (dark).

The item labels and display colors of features within this track can be configured through the controls at the top of the track description page. This page is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu.

  • Label: By default, items are labeled by gene name. Click the appropriate Label option to display the accession name instead of the gene name, show both the gene and accession names, or turn off the label completely.
  • Codon coloring: This track contains an optional codon coloring feature that allows users to quickly validate and compare gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. For more information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
  • Hide non-coding genes: By default, both the protein-coding and non-protein-coding genes are displayed. If you wish to see only the coding genes, click this box.

Methods

RefSeq RNAs were aligned against the human genome using blat; those with an alignment of less than 15% were discarded. When a single RNA aligned in multiple places, the alignment having the highest base identity was identified. Only alignments having a base identity level within 0.1% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

This track was produced at UCSC from RNA sequence data generated by scientists worldwide and curated by the NCBI RefSeq project.

References

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.

Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.