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RefSeq Gene
 

RefSeq Gene TRIM26

RefSeq: NM_003449.4   Status: Reviewed
CDS: 3' complete
OMIM: 600830
Entrez Gene: 7726
PubMed on Gene: TRIM26
PubMed on Product: tripartite motif-containing protein 26
GeneCards: TRIM26
AceView: TRIM26
Stanford SOURCE: NM_003449

Summary of TRIM26

The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to cytoplasmic bodies. Although the function of the protein is unknown, the RING domain suggests that the protein may have DNA-binding activity. The gene localizes to the major histocompatibility complex (MHC) class I region on chromosome 6. Alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jun 2011].


mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |  3606   99.9%  6_ssto_hap7     -   1482640   1511683             NM_003449     1  3606  3617
browser |  3606  100.0%          6     -  30152232  30181271             NM_003449     1  3606  3617
browser |  3606  100.0%  6_apd_hap1     -   1392422   1421465             NM_003449     1  3606  3617
browser |  3606   99.9%  6_cox_hap2     -   1664341   1693371             NM_003449     1  3606  3617
browser |  3606  100.0%  6_dbb_hap3     -   1445912   1474955             NM_003449     1  3606  3617
browser |  3606   99.9%  6_mann_hap4     -   1500731   1529767             NM_003449     1  3606  3617
browser |  3448  100.0%  6_mcf_hap5     -   1534069   1562952             NM_003449   159  3606  3617
browser |  3606  100.0%  6_qbl_hap6     -   1445147   1474192             NM_003449     1  3606  3617

Position: chr6_dbb_hap3:1445912-1474955
Genomic Size: 29044
Strand: -
Gene Symbol: TRIM26
CDS Start: complete
CDS End: complete

Position: chr6_mann_hap4:1500731-1529767
Genomic Size: 29037
Strand: -
Gene Symbol: TRIM26
CDS Start: complete
CDS End: complete

Position: chr6_mcf_hap5:1534069-1562952
Genomic Size: 28884
Strand: -
Gene Symbol: TRIM26
CDS Start: complete
CDS End: complete

Position: chr6_qbl_hap6:1445147-1474192
Genomic Size: 29046
Strand: -
Gene Symbol: TRIM26
CDS Start: complete
CDS End: complete

Position: chr6_ssto_hap7:1482640-1511683
Genomic Size: 29044
Strand: -
Gene Symbol: TRIM26
CDS Start: complete
CDS End: complete

Position: chr6:30152232-30181271
Band: 6p22.1
Genomic Size: 29040
Strand: -
Gene Symbol: TRIM26
CDS Start: complete
CDS End: complete

Position: chr6_apd_hap1:1392422-1421465
Genomic Size: 29044
Strand: -
Gene Symbol: TRIM26
CDS Start: complete
CDS End: complete

Position: chr6_cox_hap2:1664341-1693371
Genomic Size: 29031
Strand: -
Gene Symbol: TRIM26
CDS Start: complete
CDS End: complete

Links to sequence:

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Data last updated: 2013-05-15

Description

The RefSeq Genes track shows known human protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The data underlying this track are updated daily.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), reviewed (dark).

The item labels and display colors of features within this track can be configured through the controls at the top of the track description page. This page is accessed via the small button to the left of the track's graphical display or through the link on the track's control menu.

  • Label: By default, items are labeled by gene name. Click the appropriate Label option to display the accession name instead of the gene name, show both the gene and accession names, or turn off the label completely.
  • Codon coloring: This track contains an optional codon coloring feature that allows users to quickly validate and compare gene predictions. To display codon colors, select the genomic codons option from the Color track by codons pull-down menu. For more information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
  • Hide non-coding genes: By default, both the protein-coding and non-protein-coding genes are displayed. If you wish to see only the coding genes, click this box.

Methods

RefSeq RNAs were aligned against the human genome using blat; those with an alignment of less than 15% were discarded. When a single RNA aligned in multiple places, the alignment having the highest base identity was identified. Only alignments having a base identity level within 0.1% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

This track was produced at UCSC from RNA sequence data generated by scientists worldwide and curated by the NCBI RefSeq project.

References

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.

Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.