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Configure Tracks on UCSC Genome Browser: Human Feb. 2009 (GRCh37/hg19)
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-   piRNA Tracks    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Human piRNAs Human piRNAs
Human nonrepeat piRNAs Human nonrepeat piRNAs
Girard Nature 2006 Girard Nature 2006 piRNAs
Aravin Nature 2006 Aravin Nature 2006 piRNAs
Li Gene 2012 Li Gene 2012 piRNAs
-   Mapping and Sequencing Tracks    
Chromosome Band Chromosome Bands Localized by FISH Mapping Clones
Assembly Assembly from Fragments
Gap Gap Locations
Short Match Perfect Matches to Short Sequence (AAAAA)
Wiki Track Wiki Track user annotations
-   Genes and Gene Prediction Tracks    
HIWI piRNA cluster Girard Nature 2006 HIWI piRNA cluster
HILI piRNA cluster Aravin Nature 2006 HILI piRNA cluster
RefSeq Genes RefSeq Genes
Ensembl Genes Ensembl Genes
Geneid Genes Geneid Gene Predictions
tRNA Genes Transfer RNA genes identified with tRNAscan-SE
-   Expression    
myBigWig myBigWig
CSHL Small RNA-seq Small RNA-seq from ENCODE/Cold Spring Harbor Lab
-   Regulation    
A03271-1 JOC75-DNA H3K9me3 A03271-1 JOC75-DNA cortex neural stem and progenitor cells H3K9me3 Nat Commun 2015 UCSF-UBC CENTER
A03277-1 JOC76-DNA H3K9me3 A03277-1 JOC76-DNA ganglionic eminence neural stem and progenitor cells H3K9me3 Nat Commun 2015 UCSF-UBC CENTER
A03283-1 JOC77-DNA H3K9me3 A03283-1 JOC77-DNA cortex neural stem and progenitor cells H3K9me3 Nat Commun 2015 UCSF-UBC CENTER
A03389-1 JOC67-DNA H3K9me3 A03389-1 JOC67-DNA Germinal matrix tissue H3K9me3 Nat Commun 2015 UCSF-UBC CENTER
A03479-1 JOC78-DNA H3K9me3 A03479-1 JOC78-DNA ganglionic eminence neural stem and progenitor cells H3K9me3 Nat Commun 2015 UCSF-UBC CENTER
A03487-1 JOC79-DNA H3K9me3 A03487-1 JOC79-DNA fetal brain tissue ChIP-Seq H3K9me3 Nat Commun 2015 UCSF-UBC CENTER
A03495-1 JOC80-DNA H3K9me3 A03495-1 JOC80-DNA fetal brain tissue H3K9me3 Nat Commun 2015 UCSF-UBC CENTER
A03503-1 JOC091-DNA H3K9me3 A03503-1 JOC091-DNA brain (germinal matrix) tissue H3K9me3 Nat Commun 2015 UCSF-UBC CENTER
A22287-1 Testis sperm cell 5mC Bisulfite-Seq Gascard P Nat Commun 2015 A22287-1 Testis sperm cell 5mC Bisulfite-Seq
A22288-1 Testis sperm cell 5mC Bisulfite-Seq Gascard P Nat Commun 2015 A22288-1 Testis sperm cell 5mC Bisulfite-Seq
Angular Gyrus 177 H3K9me3 Angular Gyrus 177 post-mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
Angular Gyrus 221 H3K9me3 Angular Gyrus 221 Post-Mortem H3K9me3 ChIP-Seq Nat Biotechnol 2010 BROAD INSTITUTE
Anterior Caudate 173 H3K9me3 Anterior Caudate 173 post-mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
BioSAli 186 Fetal Brain H3K9me3 BioSAli 186 Fetal Brain Post-Mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
Cingulate Gyrus 175 H3K9me3 Cingulate Gyrus 175 post-mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
Cingulate Gyrus 219 H3K9me3 Cingulate Gyrus 219 Post-Mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
fetal brain H3K9me3 primary fetal brain H3K9me3 ChIP-Seq Nat Biotechnol 2010 BROAD INSTITUTE
H22510 (A02296) fetal brain 5mC MeDIP-Seq Bernstein BE Nat Biotechnol 2010 H22510 (A02296) fetal brain 5mC MeDIP-Seq
H22510 (A04895) fetal brain 5mC MRE-Seq Bernstein BE Nat Biotechnol 2010 H22510 (A04895) fetal brain 5mC MRE-Seq
H23266 (A02298) fetal brain 5mC MeDIP-Seq Bernstein BE Nat Biotechnol 2010 H23266 (A02298) fetal brain 5mC MeDIP-Seq
H23284 (A02299) fetal brain 5mC MeDIP-Seq Bernstein BE Nat Biotechnol 2010 H23284 (A02299) fetal brain 5mC MeDIP-Seq
Hippocampus Middle 172 H3K9me3 Hippocampus Middle 172 post-mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
Hippocampus Middle 216 H3K9me3 Hippocampus Middle 216 Post-Mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
Hippocampus Middle 223 H3K9me3 Hippocampus Middle 223 Post-Mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
HS2787-1 fetal brain MRE-Seq Bernstein BE Nat Biotechnol 2010 HS2787-1 fetal brain MRE-Seq
HS2788-1 fetal brain 5mC MeDIP-Seq Bernstein BE Nat Biotechnol 2010 HS2788-1 fetal brain 5mC MeDIP-Seq
HS2789-1 fetal brain MRE-Seq Bernstein BE Nat Biotechnol 2010 HS2789-1 fetal brain MRE-Seq
HS2790-1 fetal brain 5mC MeDIP-Seq Bernstein BE Nat Biotechnol 2010 HS2790-1 fetal brain 5mC MeDIP-Seq
HuFGM02 (A02758) brain 5mC MeDIP-Seq Bernstein BE Nat Biotechnol 2010 HuFGM02 (A02758) brain 5mC MeDIP-Seq
HuFGM02 (A04698) brain Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 HuFGM02 (A04698) brain Bisulfite-Seq
Inferior Temporal Lobe 176 H3K9me3 Inferior Temporal Lobe 176 post-mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
Inferior Temporal Lobe 220 H3K9me3 Inferior Temporal Lobe 220 Post-Mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
Mid Frontal Lobe 174 H3K9me3 Mid Frontal Lobe 174 H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
Mid Frontal Lobe 218 H3K9me3 Mid Frontal Lobe 218 Post-Mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
mid frontal lobe cells 5mC Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 mid frontal lobe cells 5mC Bisulfite-Seq
Right Ventricle SRS366512 H3K9me3 Right Ventricle tissue Autopsy SRS366512 H3K9me3 Nature 2015 UCSD AND SALK
RRBS1079 Fetal Brain 5mC Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 RRBS1079 Fetal Brain 5mC Bisulfite-Seq
RRBS1139 RRBS1080 fetal brain 5mC Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 RRBS1139 RRBS1080 fetal brain 5mC Bisulfite-Seq
RRBS_Lib 268 cingulate gyrus cells Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 RRBS_Lib 268 cingulate gyrus cells Bisulfite-Seq
RRBS_Lib 270 inferior temporal lobe cells 5mC Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 RRBS_Lib 270 inferior temporal lobe cells 5mC Bisulfite-Seq
RRBS_Lib 271 angular gyrus cells Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 RRBS_Lib 271 angular gyrus cells Bisulfite-Seq
RRBS_Lib 272 substantia nigra cells 5mC Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 RRBS_Lib 272 substantia nigra cells 5mC Bisulfite-Seq
RRBS_Lib 273 anterior caudate cells 5mC Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 RRBS_Lib 273 anterior caudate cells 5mC Bisulfite-Seq
RRBS_Lib 274 substantia nigra cells Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 RRBS_Lib 274 substantia nigra cells Bisulfite-Seq
RRBS_Lib 276 anterior caudate cells 5mC Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 RRBS_Lib 276 anterior caudate cells 5mC Bisulfite-Seq
STL002OV-01 Ovary H3K9me3 STL002OV-01 Ovary Autopsy H3K9me3 Nature 2015 UCSD AND SALK
Substantia Nigra 171 H3K9me3 Substantia Nigra 171 post-mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
Substantia Nigra 215 H3K9me3 Substantia Nigra 215 Post-Mortem H3K9me3 Nat Biotechnol 2010 BROAD INSTITUTE
WGBS_Lib 10 hippocampus middle cells 5mC Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 WGBS_Lib 10 hippocampus middle cells 5mC Bisulfite-Seq
WGBS_Lib 37 hippocampus middle cells Bisulfite-Seq Bernstein BE Nat Biotechnol 2010 WGBS_Lib 37 hippocampus middle cells Bisulfite-Seq
ENC DNA Methyl... ENCODE DNA Methylation
     HAIB Methyl RRBS     DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
Testis nonmeth-regions Long HK Elif 2013 non-methylated regions
TS miRNA sites TargetScan miRNA Regulatory Sites
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker