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Configure Tracks on UCSC Genome Browser: Mouse July 2007 (NCBI37/mm9)
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-   piRNA Tracks    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Mouse piRNAs Mouse piRNAs
Girard Nature 2006 Girard Nature 2006 piRNAs
Aravin Nature 2006 Aravin Nature 2006 piRNAs
Lau Science 2006 Lau Science 2006 piRNAs
Grivna Genes Dev. 2006 Grivna Genes Dev. 2006 piRNAs
gsRNA gsRNA piRNAs
Adult Miwi +/+ Reuter Nature 2011 Adult Miwi +/+
P14 Miwi +/+ Reuter Nature 2011 P14 Miwi +/+
P20 Miwi +/+ Reuter Nature 2011 P20 Miwi +/+
Adult Miwi +/ADH Reuter Nature 2011 Adult Miwi +/ADH
Adult Miwi -/ADH Reuter Nature 2011 Adult Miwi -/ADH
Vourekas 2012 Miwi Vourekas Nat Struct Mol Biol 2012 Miwi CLIP
Vourekas 2012 Mili Vourekas Nat Struct Mol Biol 2012 Mili CLIP
Type A spermatogonia Gan RNA 2011 Type A spermatogonia
Pachytene spermatocytes Gan RNA 2011 Pachytene spermatocytes
Round spermatids Gan RNA 2011 Round spermatids
MiliDAH E16.5 Mili piRNA De Fazio S Nature 2011 MiliDAH E16.5 testis Mili piRNA
Miwi2DAH E16.5 Mili piRNA De Fazio S Nature 2011 Miwi2DAH E16.5 testis Mili piRNA
Miwi2+/- E16.5 Mili piRNA De Fazio S Nature 2011 Miwi2+/- E16.5 testis Mili piRNA
Miwi2-/- E16.5 Mili piRNA De Fazio S Nature 2011 Miwi2-/- E16.5 testis Mili piRNA
wild_type E16.5 Mili piRNA De Fazio S Nature 2011 wild_type E16.5 testis Mili piRNA
MiliDAH E16.5 Miwi2 piRNA De Fazio S Nature 2011 MiliDAH E16.5 testis Miwi2 piRNA
Miwi2DAH E16.5 Miwi2 piRNA De Fazio S Nature 2011 Miwi2DAH E16.5 testis Miwi2 piRNA
wild_type E16.5 Miwi2 piRNA De Fazio S Nature 2011 wild_type E16.5 testis Miwi2 piRNA
Fkbp6+/- P0 testis Xiol J Mol Cell 2012 Fkbp6+/- P0 testis
Fkbp6-/- P0 testis Xiol J Mol Cell 2012 Fkbp6-/- P0 testis
Fkbp6+/- P10 testis Xiol J Mol Cell 2012 Fkbp6+/- P10 testis
Fkbp6-/- P10 testis Xiol J Mol Cell 2012 Fkbp6-/- P10 testis
Tdrd1+/- E18 testis Xiol J Mol Cell 2012 Tdrd1+/- E18 testis
Tdrd1-/- E18 testis Xiol J Mol Cell 2012 Tdrd1-/- E18 testis
Tdrd1+/- E18 testis Xiol J Mol Cell 2012 Tdrd1+/- E18 testis
wild type adult testis Zheng K PNAS 2010 wild type adult testis Mov10L1 IP
hippocampus Lee EJ RNA 2011 hippocampus
Tdrd9+/- 14dpp testis Shoji M Dev Cell 2009 Tdrd9+/- 14dpp testis
Tdrd9-/- 14dpp testis Shoji M Dev Cell 2009 Tdrd9-/- 14dpp testis
adult testis Miwi-IP Robine Curr Biol 2009 adult testis Miwi-IP
adult testis Mili-IP Robine Curr Biol 2009 adult testis Mili-IP
-   piRNA Function    
C57BL/6 nucleus accumbens H3K9me3 ChIP-Seq C57BL/6 nucleus accumbens H3K9me3 ChIP-Seq Genome Biol 2014 Li Shen
E16.5 Morc1 het bisulfite germ cells Stroud H Nat Commun 2014 E16.5 Morc1 het bisulfite
E16.5 Morc1 KO bisulfite germ cells Stroud H Nat Commun 2014 E16.5 Morc1 KO bisulfite
fetal forebrain E14.5 C57BL/6 H3K9me3 fetal forebrain E14.5 C57BL/6 H3K9me3 Nat Commun 2018 Masaki Kato
P10.5 Morc1 het bisuflite germ cells Stroud H Nat Commun 2014 P10.5 Morc1 het bisuflite
P10.5 Morc1 KO bisuflite germ cells Stroud H Nat Commun 2014 P10.5 Morc1 KO bisuflite
P2.5 Morc1 het bisulfite germ cells Stroud H Nat Commun 2014 P2.5 Morc1 het bisulfite
P2.5 Morc1 KO bisulfite germ cells Stroud H Nat Commun 2014 P2.5 Morc1 KO bisulfite
miwi2HET germ cells FACS H3K9me3 Pezic D Genes Dev 2014 miwi2HET germ cells FACS H3K9me3
miwi2HET germ cells FACS input Pezic D Genes Dev 2014 miwi2HET germ cells FACS input
miwi2KO germ cells FACS H3K9me3 Pezic D Genes Dev 2014 miwi2KO germ cells FACS H3K9me3
miwi2KO germ cells FACS input Pezic D Genes Dev 2014 miwi2KO germ cells FACS input
Brain DNA methylation Soumillon Cell Rep 2013 brain DNA methylation
Spermatids DNA methylation Soumillon Cell Rep 2013 spermatids DNA methylation
Spermatocytes DNA methylation Soumillon Cell Rep 2013 spermatocytes DNA methylation
Testis DNA methylation Soumillon Cell Rep 2013 testis DNA methylation
Testis nonmeth-regions Long HK Elif 2013 non-methylated regions
ES piRNA Target Sites Gou Cell Res 2014 ES piRNA Target Sites
RS piRNA Cleavage Sites Zhang Cell Res 2015 RS piRNA Cleavage Sites
RS piRNA Cleavage Target lncRNAs RS piRNA Cleavage Target lncRNAs Sites
5' Race Testis 5' Race
-   Mapping and Sequencing Tracks    
Chromosome Band Chromosome Bands Based On Microscopy
Short Match Perfect Matches to Short Sequence ()
Wiki Track Wiki Track user annotations
-   Genes and Gene Prediction Tracks    
MIWI piRNA cluster Girard Nature 2006 MIWI piRNA cluster
MILI piRNA cluster Aravin Nature 2006 MILI piRNA cluster
Mouse piRNA cluster Lau Science 2006 piRNA cluster
piRNA precursor Li Mol Cell 2013 piRNA precursor
RefSeq Genes RefSeq Genes
Ensembl Genes Ensembl Genes
tRNA Genes Transfer RNA genes identified with tRNAscan-SE
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker